{
  "_id": "6a1c0bb41d7bb097a0a2d4ce",
  "Package": "DIME",
  "Type": "Package",
  "Title": "Differential Identification using Mixture Ensemble",
  "Version": "1.3.0",
  "Date": "2022-05-07",
  "Author": "Cenny Taslim <taslim.2@osu.edu>, with contributions from Dustin\nPotter, Abbasali Khalili and Shili Lin <shili@stat.osu.edu>.",
  "Maintainer": "Cenny Taslim <taslim.2@osu.edu>",
  "License": "GPL (>= 2)",
  "Description": "A robust identification of differential binding sites\nmethod for analyzing ChIP-seq (Chromatin Immunoprecipitation\nSequencing) comparing two samples that considers an ensemble of\nfinite mixture models combined with a local false discovery\nrate (fdr) allowing for flexible modeling of data. Methods for\nDifferential Identification using Mixture Ensemble (DIME) is\ndescribed in: Taslim et al., (2011)\n<doi:10.1093/bioinformatics/btr165>.",
  "LazyLoad": "yes",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-31 10:16:02 UTC",
    "User": "root"
  },
  "Repository": "https://olechnwin.r-universe.dev",
  "Date/Publication": "2022-05-09 13:50:13 UTC",
  "RemoteUrl": "https://github.com/cran/DIME",
  "RemoteRef": "HEAD",
  "RemoteSha": "4c34813ded0a2333af020e6b9784f82edc648296",
  "MD5sum": "94f65427bbfaae3ab00014baeb6d6648",
  "_user": "olechnwin",
  "_type": "src",
  "_file": "DIME_1.3.0.tar.gz",
  "_fileid": "78a0269ebbbd2872a9e1e8ce1b2afad6001e10898259b6f294051fbd9ea0ce03",
  "_filesize": 217423,
  "_sha256": "78a0269ebbbd2872a9e1e8ce1b2afad6001e10898259b6f294051fbd9ea0ce03",
  "_created": "2026-05-31T10:16:02.000Z",
  "_published": "2026-05-31T10:21:40.323Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 78717976227,
      "time": 106,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7315902134"
    },
    {
      "job": 78717976230,
      "time": 87,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7315900244"
    },
    {
      "job": 78717976228,
      "time": 96,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7315901140"
    },
    {
      "job": 78717976253,
      "time": 108,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7315902498"
    },
    {
      "job": 78717976256,
      "time": 212,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7315909056"
    },
    {
      "job": 78717976247,
      "time": 304,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7315919479"
    },
    {
      "job": 78717976248,
      "time": 140,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7315902536"
    },
    {
      "job": 78717976241,
      "time": 209,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7315910466"
    },
    {
      "job": 78717845068,
      "time": 143,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7315891005"
    },
    {
      "job": 78717976209,
      "time": 86,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7315900074"
    },
    {
      "job": 78717976229,
      "time": 78,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7315899178"
    },
    {
      "job": 78717976223,
      "time": 76,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7315898993"
    },
    {
      "job": 78717976215,
      "time": 90,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7315900521"
    }
  ],
  "_buildurl": "https://github.com/r-universe/olechnwin/actions/runs/26709820407",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/DIME",
  "_commit": {
    "id": "4c34813ded0a2333af020e6b9784f82edc648296",
    "author": "Cenny Taslim <taslim.2@osu.edu>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.3.0\n",
    "time": 1652104213
  },
  "_maintainer": {
    "name": "Cenny Taslim",
    "email": "taslim.2@osu.edu",
    "login": "olechnwin",
    "description": "",
    "uuid": 20069067
  },
  "_registered": true,
  "_dependencies": [],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "olechnwin",
      "count": 4,
      "uuid": 20069067
    }
  ],
  "_userbio": {
    "uuid": 20069067,
    "type": "user",
    "name": "olechnwin"
  },
  "_downloads": {
    "count": 223,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/DIME"
  },
  "_mentions": 19,
  "_searchresults": 43,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/DIME.html",
    "manual.pdf"
  ],
  "_realowner": "olechnwin",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0",
      "date": "2012-10-29"
    },
    {
      "version": "1.1",
      "date": "2012-12-11"
    },
    {
      "version": "1.2",
      "date": "2013-12-09"
    },
    {
      "version": "1.3.0",
      "date": "2022-05-09"
    }
  ],
  "_exports": [
    "DIME",
    "DIME.classify",
    "DIME.plot.fit",
    "gng.classify",
    "gng.fit",
    "gng.plot.comp",
    "gng.plot.fit",
    "gng.plot.mix",
    "gng.plot.qq",
    "gng.qq.plot.internal",
    "huber",
    "inudge.classify",
    "inudge.fit",
    "inudge.plot.comp",
    "inudge.plot.fit",
    "inudge.plot.mix",
    "inudge.plot.qq",
    "inudge.qq.plot.internal",
    "nudge.classify",
    "nudge.fit",
    "nudge.plot.comp",
    "nudge.plot.fit",
    "nudge.plot.mix",
    "nudge.plot.qq"
  ],
  "_help": [
    {
      "page": "DIME-package",
      "title": "DIME (Differential Identification using Mixtures Ensemble)",
      "topics": [
        "DIME.package",
        "DIME_package"
      ]
    },
    {
      "page": "DIME",
      "title": "DIME (Differential Identification using Mixtures Ensemble)",
      "topics": [
        "DIME"
      ]
    },
    {
      "page": "DIME.classify",
      "title": "Classification Based on The Best Model",
      "topics": [
        "DIME.classify"
      ]
    },
    {
      "page": "DIME.plot.fit",
      "title": "Plot Best Model Goodness of Fit",
      "topics": [
        "DIME.plot",
        "DIME.plot.fit"
      ]
    },
    {
      "page": "gng.classify",
      "title": "Classification Based on GNG Model",
      "topics": [
        "gng.classify"
      ]
    },
    {
      "page": "gng.fit",
      "title": "Function for Fitting GNG model parameters",
      "topics": [
        "gng.fit"
      ]
    },
    {
      "page": "gng.plot.comp",
      "title": "Plot GNG Individual Components",
      "topics": [
        "gng.plot.comp"
      ]
    },
    {
      "page": "gng.plot.fit",
      "title": "Plot GNG Goodness of Fit",
      "topics": [
        "gng.plot.fit"
      ]
    },
    {
      "page": "gng.plot.mix",
      "title": "Plot GNG Mixture Component Function",
      "topics": [
        "gng.plot.mix"
      ]
    },
    {
      "page": "gng.plot.qq",
      "title": "QQ-plot of GNG model vs. observed data",
      "topics": [
        "gng.plot.qq"
      ]
    },
    {
      "page": "huber",
      "title": "Huber's weight function",
      "topics": [
        "huber"
      ]
    },
    {
      "page": "inudge.classify",
      "title": "Classification Based on iNUDGE Model",
      "topics": [
        "inudge.classify"
      ]
    },
    {
      "page": "inudge.fit",
      "title": "Function for Fitting iNUDGE model parameters",
      "topics": [
        "inudge.fit"
      ]
    },
    {
      "page": "inudge.plot.comp",
      "title": "Plot iNUDGE Individual Components",
      "topics": [
        "inudge.plot.comp"
      ]
    },
    {
      "page": "inudge.plot.fit",
      "title": "Plot iNUDGE Goodness of Fit",
      "topics": [
        "inudge.plot.fit"
      ]
    },
    {
      "page": "inudge.plot.mix",
      "title": "Plot iNUDGE Mixture Component Function",
      "topics": [
        "inudge.plot.mix"
      ]
    },
    {
      "page": "inudge.plot.qq",
      "title": "QQ-plot of GNG model vs. observed data",
      "topics": [
        "inudge.plot.qq"
      ]
    },
    {
      "page": "nudge.classify",
      "title": "Classification Based on NUDGE Model",
      "topics": [
        "nudge.classify"
      ]
    },
    {
      "page": "nudge.fit",
      "title": "Function for Fitting NUDGE model parameters",
      "topics": [
        "nudge.fit"
      ]
    },
    {
      "page": "nudge.plot.comp",
      "title": "Plot NUDGE Individual Components",
      "topics": [
        "nudge.plot.comp"
      ]
    },
    {
      "page": "nudge.plot.fit",
      "title": "Plot NUDGE Goodness of Fit",
      "topics": [
        "nudge.plot.fit"
      ]
    },
    {
      "page": "nudge.plot.mix",
      "title": "Plot NUDGE Mixture Component Function",
      "topics": [
        "nudge.plot.mix"
      ]
    },
    {
      "page": "nudge.plot.qq",
      "title": "QQ-plot of GNG model vs. observed data",
      "topics": [
        "nudge.plot.qq"
      ]
    }
  ],
  "_rundeps": [],
  "_score": 2.6334684555795866,
  "_indexed": true,
  "_nocasepkg": "dime",
  "_universes": [
    "olechnwin"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.3.0",
      "date": "2026-05-31T10:17:50.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "4c34813ded0a2333af020e6b9784f82edc648296",
      "fileid": "d43f2b75d5cba442fa0200b7690f533dc71cd8ddab7933a05a423e1d7c6356a3",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/olechnwin/actions/runs/26709820407"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.3.0",
      "date": "2026-05-31T10:17:31.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "4c34813ded0a2333af020e6b9784f82edc648296",
      "fileid": "7a8e9c03474b20341f41e371beb2ac5e87d2cfe9ac6ca1332d1acd81408f1cbe",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/olechnwin/actions/runs/26709820407"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.3.0",
      "date": "2026-05-31T10:17:42.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "4c34813ded0a2333af020e6b9784f82edc648296",
      "fileid": "ef8a82ab639d212545040f83b6c57b017701295ec90eb54c2c2718b67fdc8398",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/olechnwin/actions/runs/26709820407"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.3.0",
      "date": "2026-05-31T10:17:49.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "4c34813ded0a2333af020e6b9784f82edc648296",
      "fileid": "e8b7617ca8211f40f231b3f1ef59d05787492a1dd3bab74a865d8d6bec47f3f9",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/olechnwin/actions/runs/26709820407"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.3.0",
      "date": "2026-05-31T10:18:53.000Z",
      "arch": "aarch64",
      "commit": "4c34813ded0a2333af020e6b9784f82edc648296",
      "fileid": "5721e1e19e43b4dc314b2894ea2d019afd00c31e53bd4f2af185303aaa0a2938",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/olechnwin/actions/runs/26709820407"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.3.0",
      "date": "2026-05-31T10:20:19.000Z",
      "arch": "x86_64",
      "commit": "4c34813ded0a2333af020e6b9784f82edc648296",
      "fileid": "69855574799a03f9592e00ec8ca257db56e4946adf4aeb227ec8f3922ea5ce43",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/olechnwin/actions/runs/26709820407"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.3.0",
      "date": "2026-05-31T10:17:52.000Z",
      "arch": "aarch64",
      "commit": "4c34813ded0a2333af020e6b9784f82edc648296",
      "fileid": "3631491ae71a6b01af2505944c26ab8db083583f33d21ba9e5be00fd54daff51",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/olechnwin/actions/runs/26709820407"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.3.0",
      "date": "2026-05-31T10:19:00.000Z",
      "arch": "x86_64",
      "commit": "4c34813ded0a2333af020e6b9784f82edc648296",
      "fileid": "48fd758e1fe79529f2a62a9a854e5f9f3c150d638691e512e354ba0d5f5c59c2",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/olechnwin/actions/runs/26709820407"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.3.0",
      "date": "2026-05-31T10:17:43.000Z",
      "arch": "emscripten",
      "commit": "4c34813ded0a2333af020e6b9784f82edc648296",
      "fileid": "8948b802731be504e686499cd5e939baff99e5e75891dd8e5be81cfbed802386",
      "status": "success",
      "buildurl": "https://github.com/r-universe/olechnwin/actions/runs/26709820407"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.3.0",
      "date": "2026-05-31T10:17:10.000Z",
      "arch": "x86_64",
      "commit": "4c34813ded0a2333af020e6b9784f82edc648296",
      "fileid": "ecf5e220e0395e715622184fe1af8d1b6848b21d8520a794bb1ac46548f76a7b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/olechnwin/actions/runs/26709820407"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.3.0",
      "date": "2026-05-31T10:17:05.000Z",
      "arch": "x86_64",
      "commit": "4c34813ded0a2333af020e6b9784f82edc648296",
      "fileid": "3c0e5a54fad92cf75131ae4b496cd8d7f2614eea1e01f0ad481a4682e4c27b7b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/olechnwin/actions/runs/26709820407"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.3.0",
      "date": "2026-05-31T10:17:07.000Z",
      "arch": "x86_64",
      "commit": "4c34813ded0a2333af020e6b9784f82edc648296",
      "fileid": "c1f120bbf0d73f608815906abf2f28870a9f5d068dc307dd8e170e031d7304d4",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/olechnwin/actions/runs/26709820407"
    }
  ]
}